Publications of Wen-Feng Zeng

Bogdanow, B.; Ruwolt, M.; Ruta, J.; Mühlberg, L.; Wang, C.; Zeng, W.-F.; Elofsson, A.; Liu, F.: Redesigning error control in cross-linking mass spectrometry enables more robust and sensitive protein-protein interaction studies. Molecular Systems Biology 21 (1), pp. 90 - 106 (2025)

Strauss, M. T.; Bludau, I.; Zeng, W.-F.; Voytik, E.; Ammar, C.; Schessner, J. P.; Ilango, R.; Gill, M.; Meier, F.; Willems, S. et al.; Mann, M.: AlphaPept: A modern and open framework for MS-based proteomics. Nature Communications 15 (1), 2168 (2024)

Steigerwald, S.; Sinha, A.; Fort, K. L.; Zeng, W.-F.; Niu, L.; Wichmann, C.; Kreutzmann, A.; Mourad, D.; Aizikov, K.; Grinfeld, D. et al.; Makarov, A.; Mann, M.; Meier, F.: Full Mass Range ΦSDM Orbitrap Mass Spectrometry for DIA Proteome Analysis. Molecular & Cellular Proteomics 23 (2), 100713 (2024)

Wahle, M.; Thielert, M.; Zwiebel, M.; Skowronek, P.; Zeng, W.-F.; Mann, M.: IMBAS-MS discovers organ-specific HLA peptide patterns in plasma. Molecular & Cellular Proteomics 23 (1), 100689 (2024)

Thielert, M.; Itang, E. C. M.; Ammar, C.; Rosenberger, F. A.; Bludau, I.; Schweizer, L.; Nordmann, T. M.; Skowronek, P.; Wahle, M.; Zeng, W.-F. et al.; Zhou, X.-X.; Brunner, A.-D.; Richter, S.; Levesque, M. P.; Theis, F. J.; Steger, M.; Mann, M.: Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Molecular Systems Biology 19 (9), e1150 (2023)

Schweizer, L.; Schaller, T.; Zwiebel, M.; Karayel, O.; Müller-Reif, J. B.; Zeng, W.-F.; Dintner, S.; Nordmann, T. M.; Hirschbuehl, K.; Maerkl, B. et al.; Claus, R.; Mann, M.: Quantitative multiorgan proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation. EMBO Molecular Medicine 15 (9), e17459 (2023)

Kong, S.; Gong, P.; Zeng, W.-F.; Jiang, B.; Hou, X.; Zhang, Y.; Zhao, H.; Liu, M.; Yan, G.; Zhou, X. et al.; Qiao, X.; Wu, M.; Yang, P.; Liu, C.; Cao, W.: pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level. Nature Communications 13 (1), 7539 (2022)

Zeng, W.-F.; Zhou, X.-X.; Willems, S.; Ammar, C.; Wahle, M.; Bludau, I.; Voytik, E.; Strauss, M. T.; Mann, M.: AlphaPeptDeep: A modular deep learning framework to predict peptide properties for proteomics. Nature Communications 13 (1), 7238 (2022)

Bludau, I.; Willems, S.; Zeng, W.-F.; Strauss, M. T.; Hansen, F. M.; Tanzer, M. C.; Karayel, O.; Schulman, B. A.; Mann, M.: The structural context of posttranslational modifications at a proteome-wide scale. PLoS Biology 20 (5), e3001636 (2022)