Publications of the Institute

Li, Y.; Chen, D.; Tang, T.; Shen, X.: HTR-VT: Handwritten text recognition with vision transformer. Pattern Recognition 158, 110967 (2025)

Bondarieva, A.; Tachibana, K.: Genome folding and zygotic genome activation in mammalian preimplantation embryos. Current Opinion in Genetics & Development 89, 102268 (2024)

Reimão-Pinto, M. M.; Behrens, A.; Forcelloni, S.; Fröhlich, K.; Kaya, S.; Nedialkova, D. D.: The dynamics and functional impact of tRNA repertoires during early embryogenesis in zebrafish. The EMBO Journal 43, pp. 5747 - 5779 (2024)

Ke, Z.; Peacock, T. P.; Brown, J. C.; Sheppard, C. M.; Croll, T. I.; Kotecha, A.; Goldhill, D. H.; Barclay, W. S.; Briggs, J. A. G.: Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants. The EMBO Journal (2024)

Wagner, J.; Bracher, A.: Cage-like complexes that protect folding proteins visualized in cells. Nature (2024)

Farnung, J.; Schulman, B. A.: Ubiquitin is a chemist's playground. Nature Chemistry 16 (11), p. 1918 - 1918 (2024)

Schillinger, J.; Koci, M.; Bravo-Rodriguez, K.; Heilmann, G.; Kaschani, F.; Kaiser, M.; Beuck, C.; Luecke, H.; Huber, R.; Hellerschmied, D. et al.; Burston, S. G.; Ehrmann, M.: High resolution analysis of proteolytic substrate processing. Journal of Biological Chemistry 300 (11), 107812 (2024)

Nordmann, T. M.; Anderton, H.; Hasegawa, A.; Schweizer, L.; Zhang, P.; Stadler, P.-C.; Sinha, A.; Metousis, A.; Rosenberger, F. A.; Zwiebel, M. et al.; Satoh, T. K.; Anzengruber, F.; Strauss, M. T.; Tanzer, M. C.; Saito, Y.; Gong, T.; Thielert, M.; Kimura, H.; Silke, N.; Rodriguez, E.; Restivo, G.; Nguyen, H. H.; Gross, A.; Feldmeyer, L.; Joerg, L.; Levesque, M. P.; Murray, P. J.; Ingen-Housz-Oro, S.; Mund, A.; Abe, R.; Silke, J.; Ji, C.; French, L. E.; Mann, M.: Spatial proteomics identifies JAKi as treatment for a lethal skin disease. Nature (2024)

Wirth, F.; Zoeller, C.; Lubosch, A.; Schroeder-Braunstein, J.; Wabnitz, G.; Nakchbandi, I. A.: Insights into the metastatic bone marrow niche gained from fibronectin and ß1 integrin transgenic mice. Neoplasia 58, 101058 (2024)

Kögel, A.; Keidel, A.; Loukeri, M.-J.; Kuhn, C. C.; Langer, L. M.; Schäfer, I. B.; Conti, E.: Structural basis of mRNA decay by the human exosome–ribosome supercomplex. Nature 635, pp. 237 - 242 (2024)

Huang, J.; Jaekel, A.; van den Boom, J.; Podlesainski, D.; Elnaggar, M.; Heuer-Jungemann, A.; Kaiser, M.; Meyer, H.; Sacca, B.: A modular DNA origami nanocompartment for engineering a cell-free, protein unfolding and degradation pathway. Nature Nanotechnology 19, pp. 1521 - 1531 (2024)

Llavanera, M.: Evaluation of sperm quality and male fertility: The use of molecular markers in boar sperm and seminal plasma. Animal Reproduction Science 269, 107545 (2024)

Van den Eynde, R.; Hertel, F.; Abakumov, S.; Krajnik, B.; Hugelier, S.; Auer, A.; Hellmeier, J.; Schlichthärle, T.; Grattan, R. M.; Lidke, D. S. et al.; Jungmann, R.; Leutenegger, M.; Vandenberg, W.; Dedecker, P.: Simultaneous multicolor fluorescence imaging using PSF splitting. Nature Methods 21 (10), pp. 1801 - 1805 (2024)

Yu, Z.; Baptist, A. V.; Reinhardt, S. C. M.; Bertosin, E.; Dekker, C.; Jungmann, R.; Heuer-Jungemann, A.; Caneva, S.: Compliant DNA origami nanoactuators as size-selective nanopores. Advanced Materials 36 (39), 2405104 (2024)

Burgy, O.; Mayr, C. H.; Schenesse, D.; Papakonstantinou, E. F.; Ballester, B.; Sengupta, A.; She, Y.; Hu, Q.; Melo-Narvaez, M. C.; Jain, E. et al.; Pestoni, J. C.; Mozurak, M.; Estrada-Bernal, A.; Onwuka, U.; Coughlan, C.; Parimon, T.; Chen, P.; Heimerl, T.; Bange, G.; Schmeck, B. T.; Lindner, M.; Hilgendorff, A.; Ruppert, C.; Guenther, A.; Mann, M.; Yildirim, A. O.; Eickelberg, O.; Jung, A. L.; Schiller, H. B.; Lehmann, M.; Burgstaller, G.; Koenigshoff, M.: Fibroblast-derived extracellular vesicles contain SFRP1 and mediate pulmonary fibrosis. JCI Insight 9 (18), e168889 (2024)

Zhang, X.; Avellaneda, J.; Spletter, M. L.; Lemke, S. B.; Mangeol, P.; Habermann, B.; Schnorrer, F.: Mechanoresponsive regulation of myogenesis by the force-sensing transcriptional regulator Tono. Current Biology 34 (18), pp. 4143 - 4159.e6 (2024)

Kabatnik, S.; Post, F.; Drici, L.; Bartels, A. S.; Strauss, M. T.; Zheng, X.; Madsen, G. I.; Mund, A.; Rosenberger, F. A.; Moreira, J. et al.; Mann, M.: Spatial characterization and stratification of colorectal adenomas by deep visual proteomics. iScience 27 (9), 110620 (2024)

Juhasz, B.; Horvath, K.; Kuti, D.; Shen, J.; Feuchtinger, A.; Zhang, C.; Bata-Vidacs, I.; Nagy, I.; Kukolya, J.; Witting, M. et al.; Baranyi, M.; Ferenczi, S.; Walch, A.; Sun, N.; Kovacs, K. J.: Dipeptide metabolite, glutamyl-glutamate mediates microbe-host interaction to boost spermatogenesis. Scientific Reports 14 (1), 21864 (2024)

Hoeft, K.; Koch, L.; Ziegler, S.; Zhang, L.; Luetke, S.; Tanzer, M. C.; Mohanta, D.; Schumacher, D.; Schreibing, F.; Long, Q. Q. et al.; Kim, H.; Klinkhammer, B. M.; Schikarski, C.; Maryam, S.; Baens, M.; Hermann, J.; Krieg, S.; Peisker, F.; De Laporte, L.; Schaefer, G. J. L.; Menzel, S.; Jankowski, J.; Humphreys, B. D.; Wahida, A.; Schneider, R. K.; Versele, M.; Boor, P.; Mann, M.; Sengle, G.; Hayat, S.; Kramann, R.: ADAMTS12 promotes fibrosis by restructuring extracellular matrix to enable activation of injury- responsive fibroblasts. The Journal of Clinical Investigation 134 (18), e170246 (2024)

Wagner, J.; Carvajal, A. I.; Bracher, A.; Beck, F.; Wan, W.; Bohn, S.; Körner, R.; Baumeister, W.; Fernandez-Busnadiego, R.; Hartl, F. U.: Visualizing chaperonin function in situ by cryo-electron tomography. Nature 633 (8029), pp. 459 - 464 (2024)