Publications of Nagarjuna Nagaraj

Zaupa, M.; Nagaraj, N.; Sylenko, A.; Baier, H.; Sawamiphak, S.; Filosa, A.: The Calmodulin-interacting peptide Pcp4a regulates feeding state-dependent behavioral choice in zebrafish. Neuron 112 (7), pp. 1150 - 1164 (2024)

Zuidema, A.; Atherton, P.; Kreft, M.; Hoekman, L.; Bleijerveld, O. B.; Nagaraj, N.; Chen, N.; Fässler, R.; Sonnenberg, A.: PEAK1 Y635 phosphorylation regulates cell migration through association with Tensin3 and integrins. Journal of Cell Biology 221 (8), e202108027 (2022)

Schraut, K.-G.; Kalnytska, O.; Lamp, D.; Jastroch, M.; Eder, M.; Hausch, F.; Gassen, N. C.; Moore, S.; Nagaraj, N.; Lopez, J. P. et al.; Chen, A.; Schmidt V, M.: Loss of the psychiatric risk factor SLC6A15 is associated with increased metabolic functions in primary hippocampal neurons. European Journal of Neuroscience 53, pp. 390 - 401 (2021)

Tain, L. S.; Sehlke, R.; Meilenbrock, R. L.; Leech, T.; Paulitz, J.; Chokkalingam, M.; Nagaraj, N.; Groenke, S.; Froehlich, J.; Atanassov, I. et al.; Mann, M.; Beyer, A.; Partridge, L.: Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila. eLife 10, e67275 (2021)

Schorr, S.; Nguyen, D.; Hassdenteufel, S.; Nagaraj, N.; Cavalie, A.; Greiner, M.; Weissgerber, P.; Loi, M.; Paton, A. W.; Paton, J. C. et al.; Molinari, M.; Forster, F.; Dudek, J.; Lang, S.; Helms, V.; Zimmermann, R.: Identification of signal peptide features for substrate specificity in human Sec62/Sec63-dependent ER protein import. FEBS JOURNAL 287, pp. 4612 - 4640 (2020)

Iacobucci, C.; Piotrowski, C.; Aebersold, R.; Amaral, B. C.; Andrews, P.; Bernfur, K.; Borchers, C.; Brodie, N. I.; Bruce, J. E.; Cao, Y. et al.; Chaignepain, S.; Chavez, J. D.; Claverol, S.; Cox, J.; Davis, T.; Degliesposti, G.; Dong, M.-Q.; Edinger, N.; Emanuelsson, C.; Gay, M.; Goetze, M.; Gomes-Neto, F.; Gozzo, F. C.; Gutierrez, C.; Haupt, C.; Heck, A. J. R.; Herzog, F.; Huang, L.; Hoopmann, M. R.; Kalisman, N.; Klykov, O.; Kukacka, Z.; Liu, F.; MacCoss, M. J.; Mechtler, K.; Mesika, R.; Moritz, R. L.; Nagaraj, N.; Nesati, V.; Neves-Ferreira, A. G. C.; Ninnis, R.; Novak, P.; O'Reilly, F. J.; Pelzing, M.; Petrotchenko, E.; Piersimoni, L.; Plasencia, M.; Pukala, T.; Rand, K. D.; Rappsilber, J.; Reichmann, D.; Sailer, C.; Sarnowski, C. P.; Scheltema, R. A.; Schmidt, C.; Schriemer, D. C.; Shi, Y.; Skehel, J. M.; Slavin, M.; Sobott, F.; Solis-Mezarino, V.; Stephanowitz, H.; Stengel, F.; Stieger, C. E.; Trabjerg, E.; Trnka, M.; Vilaseca, M.; Viner, R.; Xiang, Y.; Yilmaz, S.; Zelter, A.; Ziemianowicz, D.; Leitner, A.; Sinz, A.: First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. Analytical Chemistry 91 (11), pp. 6953 - 6961 (2019)

Itzhak, D. N.; Sacco, F.; Nagaraj, N.; Tyanova, S.; Mann, M.; Murgia, M.: SILAC-based quantitative proteomics using mass spectrometry quantifies endoplasmic reticulum stress in whole HeLa cells. DISEASE MODELS & MECHANISMS 12 (11), UNSP dmm040741 (2019)

Tain, L. S.; Sehlke, R.; Jain, C.; Chokkalingam, M.; Nagaraj, N.; Essers, P.; Rassner, M.; Groenke, S.; Froelich, J.; Dieterich, C. et al.; Mann, M.; Alic, N.; Beyer, A.; Partridge, L.: A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Molecular Systems Biology 13 (9), 939 (2017)

Murgia, M.; Toniolo, L.; Nagaraj, N.; Ciciliot, S.; Vindigni, V.; Schiaffino, S.; Reggiani, C.; Mann, M.: Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging. Cell Reports 19 (11), pp. 2396 - 2409 (2017)

Furlan, S.; Mosole, S.; Murgia, M.; Nagaraj, N.; Argenton, F.; Volpe, P.; Nori, A.: Calsequestrins in skeletal and cardiac muscle from adult Danio rerio. Journal of muscle research and cell motility, [Epub ahead of print] (2015)

Fortuin, S.; Tomazella, G. G.; Nagaraj, N.; Sampson, S. L.; van Pittius, N. C. G.; Soares, N. C.; Wiker, H. G.; de Souza, G. A.; Warren, R. M.: Phosphoproteomics analysis of a clinical Mycobacterium tuberculosis Beijing isolate: expanding the mycobacterial phosphoproteome catalog. FRONTIERS IN MICROBIOLOGY 6, 6 (2015)

Bauer, C.; Goebel, K.; Nagaraj, N.; Colantuoni, C.; Wang, M.; Mueller, U.; Kremmer, E.; Rottach, A.; Leonhardt, H.: Phosphorylation of TET Proteins Is Regulated via O-GlcNAcylation by the O-Linked N-Acetylglucosamine Transferase (OGT). JOURNAL OF BIOLOGICAL CHEMISTRY 290 (8), pp. 4801 - 4812 (2015)

Deshmukh, A. S.; Murgia, M.; Nagaraj, N.; Treebak, J. T.; Cox, J.; Mann, M.: Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors. MOLECULAR & CELLULAR PROTEOMICS 14 (4), pp. 841 - 853 (2015)

Hein, M. Y.; Hubner, N. C.; Poser, I.; Cox, J.; Nagaraj, N.; Toyoda, Y.; Gak, I. A.; Weisswange, I.; Mansfeld, J.; Buchholz, F. et al.; Hyman, A. A.; Mann, M.: A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances. CELL 163 (3), pp. 712 - 723 (2015)

Inacio, P.; Zuzarte-Luis, V.; Ruivo, M. T. G.; Falkard, B.; Nagaraj, N.; Rooijers, K.; Mann, M.; Mair, G.; Fidock, D. A.; Mota, M. M.: Parasite-induced ER stress response in hepatocytes facilitates Plasmodium liver stage infection. EMBO REPORTS 16 (8), pp. 955 - 964 (2015)

Murgia, M.; Nagaraj, N.; Deshmukh, A. S.; Zeiler, M.; Cancellara, P.; Moretti, I.; Reggiani, C.; Schiaffino, S.; Mann, M.: Single muscle fiber proteomics reveals unexpected mitochondrial specialization. EMBO reports 16 (3), pp. 387 - 395 (2015)

Räschle, M.; Smeenk, G.; Hansen, R. K.; Temu, T.; Oka, Y.; Hein, M. Y.; Nagaraj, N.; Long, D. T.; Walter, J. C.; Hofmann, K. et al.; Storchova, Z.; Cox, J.; Bekker-Jensen, S.; Mailand, N.; Mann, M.: Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links. SCIENCE 348 (6234), 1253671 (2015)

Cox, J.; Hein, M. Y.; Luber, C. A.; Paron, I.; Nagaraj, N.; Mann, M.: Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ. MOLECULAR & CELLULAR PROTEOMICS 13 (9), pp. 2513 - 2526 (2014)

Kulak, N. A.; Pichler, G.; Paron, I.; Nagaraj, N.; Mann, M.: Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells. NATURE METHODS 11 (3), pp. 319 - 324 (2014)

Azimifar, S. B.; Nagaraj, N.; Cox, J.; Mann, M.: Cell-type-resolved quantitative proteomics of murine liver. Cell metabolism 20 (6), pp. 1076 - 1087 (2014)