Publications of Pavel Sinitcyn

Sinitcyn, P.; Richards, A. L.; Weatheritt, R. J.; Brademan, D. R.; Marx, H.; Shishkova, E.; Meyer, J. G.; Hebert, A. S.; Westphall, M. S.; Blencowe, B. J. et al.; Cox, J.; Coon, J. J.: Global detection of human variants and isoforms by deep proteome sequencing. Nature Biotechnology 41, pp. 1776 - 1786 (2023)

Schessner, J. P.; Albrecht, V.; Davies, A. K.; Sinitcyn, P.; Borner, G. H. H.: Deep and fast label-free Dynamic Organellar Mapping. Nature Communications 14 (1), 5252 (2023)

Aldonza, M. B. D.; Cha, J.; Yong, I.; Ku, J.; Sinitcyn, P.; Lee, D.; Cho, R.-E.; Delos Reyes, R. D.; Kim, D.; Kim, S. et al.; Kang, M.; Ku, Y.; Park, G.; Sung, H.-J.; Ryu, H. S.; Cho, S.; Kim, T. M.; Kim, P.; Cho, J.-Y.; Kim, Y.: Multi-targeted therapy resistance via drug-induced secretome fucosylation. eLife 12, e75191 (2023)

Snapkov, I.; Chernigovskaya, M.; Sinitcyn, P.; Quy, K. L.; Nyman, T. A.; Greiff, V.: Progress and challenges in mass spectrometry-based analysis of antibody repertoires. Trends in Biotechnology 40 (4), pp. 463 - 481 (2022)

Sinitcyn, P.; Hamzeiy, H.; Salinas Soto, F.; Itzhak, D.; McCarthy, F.; Wichmann, C.; Steger, M.; Ohmayer, U.; Distler, U.; Kaspar-Schoenefeld, S. et al.; Prianichnikov, N.; Yilmaz, S.; Rudolph, J. D.; Tenzer, S.; Perez-Riverol, Y.; Nagaraj, N.; Humphrey, S. J.; Cox, J.: MaxDIA enables library-based and library-free data-independent acquisition proteomics. Nature Biotechnology 39, pp. 1563 - 1573 (2021)

Sinitcyn, P.; Rudolph, J. D.; Cox, J.: Computational Methods for Understanding Mass Spectrometry-Based Shotgun Proteomics Data. Annual Review of Biomedical Data Science 1 (1), pp. 207 - 234 (2018)

Shurtleff, M. J.; Itzhak, D. N.; Hussmann, J. A.; Oakdale, N. T. S.; Costa, E. A.; Jonikas, M.; Weibezahn, J.; Popova, K. D.; Jan, C. H.; Sinitcyn, P. et al.; Vembar, S. S.; Hernandez, H.; Cox, J.; Burlingame, A. L.; Brodsky, J.; Frost, A.; Borner, G. H. H.; Weissman, J. S.: The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins. eLife 7, e37018 (2018)

Sinitcyn, P.; Tiwary, S.; Rudolph, J.; Gutenbrunner, P.; Wichmann, C.; Yilmaz, S.; Hamzeiy, H.; Salinas, F.; Cox, J.: MaxQuant goes Linux. Nature methods 15 (6), p. 401 - 401 (2018)

Bassani-Sternberg, M.; Braunlein, E.; Klar, R.; Engleitner, T.; Sinitcyn, P.; Audehm, S.; Straub, M.; Weber, J.; Slotta-Huspenina, J.; Specht, K. et al.; Martignoni, M. E.; Werner, A.; Hein, R.; Busch, D. H.; Peschel, C.; Rad, R.; Cox, J.; Mann, M.; Krackhardt, A. M.: Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry. Nature Communications 7, 13404 (2016)

Grassl, N.; Kulak, N. A.; Pichler, G.; Geyer, P. E.; Jung, J.; Schubert, S.; Sinitcyn, P.; Cox, J.; Mann, M.: Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. GENOME MEDICINE 8, 44 (2016)

Tyanova, S.; Temu, T.; Sinitcyn, P.; Carlson, A.; Hein, M. Y.; Geiger, T.; Mann, M.; Cox, J.: The Perseus computational platform for comprehensive analysis of (prote)omics data. Nature methods 13 (9), pp. 731 - 740 (2016)

Tyanova, S.; Temu, T.; Carlson, A.; Sinitcyn, P.; Mann, M.; Cox, J.: Visualization of LC-MS/MS proteomics data in MaxQuant. PROTEOMICS 15 (8), pp. 1453 - 1456 (2015)

Braeunlein, E.; Lupoli, G.; Pecoraro, M.; Engleitner, T.; Stelzl, A.; Boxberg, M.; Sinitcyn, P.; Cox, J.; Steiger, K.; Weichert, W. et al.; Rad, R.; Mann, M.; Krackhardt, A. M.: Spatial and temporal monitoring of neoantigen-specific T cells and T-cell receptors in a melanoma patient with secondary immune resistance to Ipilimumab. In Oncology Research and Treatment, 41 (Suppl. 4), pp. 85 - 86. Jahrestagung der Deutschen, Österreichischen und Schweizerischen Gesellschaften für Hämatologie und Medizinische Onkologie, Wien, September 28, 2018 - October 02, 2018. Karger, Basel (2018)