Publications of J. Cox
All genres
Journal Article (141)
101.
Journal Article
10 (8), M110.003699, pp. [1] - [9] (2011)
Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation. Molecular & Cellular Proteomics 102.
Journal Article
10 (4), pp. 1794 - 1805 (2011)
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 103.
Journal Article
10 (4), pp. 1785 - 1793 (2011)
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS. Journal of Proteome Research 104.
Journal Article
6 (2), pp. 147 - 157 (2011)
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nature Protocols 105.
Journal Article
6, 450, pp. [1] - [9] (2010)
Defining the transcriptome and proteome in three functionally different human cell lines. Molecular Systems Biology 106.
Journal Article
9 (12), pp. 6786 - 6794 (2010)
Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation. Journal of Proteome Research 107.
Journal Article
9 (10), pp. 2252 - 2261 (2010)
Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation. Molecular & Cellular Proteomics 108.
Journal Article
6 (9), e1001090, pp. [1] - [11] (2010)
Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells. PLoS Genetics 109.
Journal Article
26 (13), pp. 1666 - 1668 (2010)
Predicting post-translational lysine acetylation using support vector machines. Bioinformatics 110.
Journal Article
9 (6), pp. 1047 - 1062 (2010)
An Integrated Phosphoproteomics Work Flow Reveals Extensive Network Regulation in Early Lysophosphatidic Acid Signaling. Molecular & Cellular Proteomics 111.
Journal Article
189 (4), pp. 739 - 754 (2010)
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions. Journal of Cell Biology 112.
Journal Article
7 (5), pp. 383 - 385 (2010)
Super-SILAC mix for quantitative proteomics of human tumor tissue. Nature Methods 113.
Journal Article
32 (2), pp. 279 - 289 (2010)
Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells. Immunity 114.
Journal Article
3 (104), ra3, pp. [1] - [15] (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis. Science Signaling 115.
Journal Article
9 (1), pp. 393 - 403 (2010)
MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics. Journal of Proteome Research 116.
Journal Article
36 (2), pp. 326 - 339 (2009)
Mislocalized Activation of Oncogenic RTKs Switches Downstream Signaling Outcomes. Molecular Cell 117.
Journal Article
9 (20), pp. 4642 - 4652 (2009)
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast. Proteomics 118.
Journal Article
6 (10), pp. 741 - 744 (2009)
Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nature Methods 119.
Journal Article
20 (8), pp. 1477 - 1485 (2009)
Computational Principles of Determining and Improving Mass Precision and Accuracy for Proteome Measurements in an Orbitrap. Journal of the American Society for Mass Spectrometry 120.
Journal Article
37 (Suppl. Suppl. 1), p. 66 - 66 (2009)
Analysis of in vivo histone methylation kinetics by Heavy Methyl SILAC. Amino Acids