Publications of Jacek R. Wisniewski

Sharma, K.; D'Souza, R. C. J.; Tyanova, S.; Schaab, C.; Wisniewski, J. R.; Cox, J.; Mann, M.: Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling. CELL REPORTS 8 (5), pp. 1583 - 1594 (2014)

Wisniewski, J. R.; Hein, M. Y.; Cox, J.; Mann, M.: A "Proteomic Ruler" for Protein Copy Number and Concentration Estimation without Spike-in Standards. Molecular & cellular proteomics: MCP 13 (12), pp. 3497 - 3506 (2014)

Wisniewski, J. R.; Rakus, D.: Multi-enzyme digestion FASP and the 'Total Protein Approach'-based absolute quantification of the Escherichia coli proteome. Journal of proteomics 109, pp. 322 - 331 (2014)

Wisniewski, J. R.; Rakus, D.: Quantitative analysis of the Escherichia coli proteome. Data in brief 1, pp. 7 - 11 (2014)

Hotowy, K.; Wozniak, M.; Dus, K.; Czapinska, E.; Osiecka, B.; Krzystek-Korpacka, M.; Bronowicz, A.; Wisniewski, J.; Gamian, A.; Terlecki, G. et al.; Ziolkowski, P.: Immunocytochemical studies on the nuclear ubiquitous casein and cyclin-dependent kinases substrate following 5-aminolevulinicacid-mediated photodynamic therapy on MCF-7 cells. PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY 10 (4), pp. 518 - 525 (2013)

Wisniewski, J. R.; Dus, K.; Mann, M.: Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins. PROTEOMICS - Clinical Applications. Special Issue: Proteomic Analysis of Formalin Fixed Tissue 7 (3-4), pp. 225 - 233 (2013)

Boersema, P. J.; Geiger, T.; Wisniewski, J. R.; Mann, M.: Quantification of the N-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood Samples. MOLECULAR & CELLULAR PROTEOMICS 12 (1), pp. 158 - 171 (2013)

Studencka, M.; Wesolowski, R.; Opitz, L.; Salinas-Riester, G.; Wisniewski, J. R.; Jedrusik-Bode, M.: Transcriptional repression of Hox genes by C. elegans HP1/HPL and H1/HIS-24. PLoS Genetics 8 (9), e1002940 (2012)

Wisniewski, J. R.; Ostasiewicz, P.; Dus, K.; Zielinska, D. F.; Gnad, F.; Mann, M.: Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma. Molecular Systems Biology 8, 611, pp. [1] - [15] (2012)

Zielinska, D. F.; Gnad, F.; Schropp, K.; Wisniewski, J. R.; Mann, M.: Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery. Molecular Cell 46 (4), pp. 542 - 548 (2012)

Karlgren, M.; Vildhede, A.; Norinder, U.; Wisniewski, J. R.; Kimoto, E.; Lai, Y. R.; Haglund, U.; Artursson, P.: Classification of Inhibitors of Hepatic Organic Anion Transporting Polypeptides (OATPs): Influence of Protein Expression on Drug - Drug Interactions. Journal of Medicinal Chemistry 55 (10), pp. 4740 - 4763 (2012)

Kamieniarz, K.; Izzo, A.; Dundr, M.; Tropberger, P.; Ozretic, L.; Kirfel, J.; Scheer, E.; Tropel, P.; Wisniewski, J. R.; Tora, L. et al.; Viville, S.; Buettner, R.; Schneider, R.: A dual role of linker histone H1.4 Lys 34 acetylation in transcriptional activation. Genes & Development 26 (8), pp. 797 - 802 (2012)

Wisniewski, J. R.; Mann, M.: Consecutive Proteolytic Digestion in an Enzyme Reactor Increases Depth of Proteomic and Phosphoproteomic Analysis. Analytical Chemistry 84 (6), pp. 2631 - 2637 (2012)

Studencka, M.; Konzer, A.; Moneron, G.; Wenzel, D.; Opitz, L.; Salinas-Riester, G.; Bedet, C.; Kruger, M.; Hell, S. W.; Wisniewski, J. R. et al.; Schmidt, H.; Palladino, F.; Schulze, E.; Jedrusik-Bode, M.: Novel Roles of Caenorhabditis elegans Heterochromatin Protein HP1 and Linker Histone in the Regulation of Innate Immune Gene Expression. Molecular and Cellular Biology 32 (2), pp. 251 - 265 (2012)

Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Pääbo, S.; Mann, M.: Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology 7, 548, pp. [1] - [8] (2011)

Zougman, A.; Mann, M.; Wisniewski, J. R.: Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene. Nucleic Acids Research 39 (16), pp. 7103 - 7113 (2011)

Wisniewski, J. R.: Tools for phospho- and glycoproteomics of plasma membranes. Amino Acids 41 (2), pp. 223 - 233 (2011)

Wisniewski, J. R.; Ostasiewicz, P.; Mann, M.: High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers. Journal of Proteome Research 10 (7), pp. 3040 - 3049 (2011)

Wisniewski, J. R.; Zielinska, D. F.; Mann, M.: Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method. Analytical Biochemistry 410 (2), pp. 307 - 309 (2011)

Geiger, T.; Wisniewski, J. R.; Cox, J.; Zanivan, S.; Kruger, M.; Ishihama, Y.; Mann, M.: Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nature Protocols 6 (2), pp. 147 - 157 (2011)