Publications of Nagarjuna Nagaraj

Christiano, R.; Nagaraj, N.; Froehlich, F.; Walther, T. C.: Global Proteome Turnover Analyses of the Yeasts S-cerevisiae and S-pombe. CELL REPORTS 9 (5), pp. 1959 - 1965 (2014)

D'Souza, R. C. J.; Knittle, A. M.; Nagaraj, N.; van Dinther, M.; Choudhary, C.; ten Dijke, P.; Mann, M.; Sharma, K.: Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-beta. SCIENCE SIGNALING 7 (335), rs5 (2014)

Geiger, T.; Velic, A.; Macek, B.; Lundberg, E.; Kampf, C.; Nagaraj, N.; Uhlen, M.; Cox, J.; Mann, M.: Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse. MOLECULAR & CELLULAR PROTEOMICS 12 (6), pp. 1709 - 1722 (2013)

Neuhauser, N.; Nagaraj, N.; McHardy, P.; Zanivan, S.; Scheltema, R.; Cox, J.; Mann, M.: High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome. JOURNAL OF PROTEOME RESEARCH 12 (6), pp. 2858 - 2868 (2013)

Mann, M.; Kulak, N. A.; Nagaraj, N.; Cox, J.: The Coming Age of Complete, Accurate, and Ubiquitous Proteomes. MOLECULAR CELL 49 (4), pp. 583 - 590 (2013)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation (vol 9, pg 6786, 2010). JOURNAL OF PROTEOME RESEARCH 11 (6), pp. 3506 - 3508 (2012)

Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Pääbo, S.; Mann, M.: Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology 7, 548, pp. [1] - [8] (2011)

Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhauser, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M.: System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap. Molecular & Cellular Proteomics (Special Issue: Prospects in Space and Time) 11 (3), M111.013722, pp. [1] - [11] (2011)

Michalski, A.; Damoc, E.; Hauschild, J. P.; Lange, O.; Wieghaus, A.; Makarov, A.; Nagaraj, N.; Cox, J.; Mann, M.; Horning, S.: Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer. Molecular & Cellular Proteomics 10 (9), M111.011015, pp. [1] - [11] (2011)

Monetti, M.; Nagaraj, N.; Sharma, K.; Mann, M.: Large-scale phosphosite quantification in tissues by a spike-in SILAC method. Nature Methods 8 (8), pp. 655 - 659 (2011)

Nagaraj, N.; Mann, M.: Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome. Journal of Proteome Research 10 (2), pp. 637 - 645 (2011)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation. Journal of Proteome Research 9 (12), pp. 6786 - 6794 (2010)

Wisniewski, J. R.; Nagaraj, N.; Zougman, A.; Gnad, F.; Mann, M.: Brain Phosphoproteome Obtained by a FASP-Based Method Reveals Plasma Membrane Protein Topology. Journal of Proteome Research 9 (6), pp. 3280 - 3289 (2010)

Wisniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M.: Universal sample preparation method for proteome analysis. Nature Methods 6 (5), pp. 359 - 362 (2009)

Nagaraj, N.; Lu, A. P.; Mann, M.; Wisniewski, J. R.: Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs. Journal of Proteome Research 7 (11), pp. 5028 - 5032 (2008)

Martinelli, S.; Park, D.; Hafner, H.; Nagaraj, N.; Binder, E.; Gassen, N. C.: Unraveling the Effect of Physiological Stress on Chaperone Mediated Autophagy-Dependent Synaptic Proteostasis. In Biological Psychiatry, 83 (9), T180, pp. S197 - S198. 73rd Annual Scientific Convention and Meeting of the Society-of-Biological-Psychiatry (SOBP), New York, NY, May 10, 2018. Elsevier, New York (2018)

Agoston, D. V.; Kamnaksh, A.; Olson, J.; Nagaraj, N.; Mann, M.; Risling, M.; Thelin, E.; Bellander, B.-M.: Biomarker changes in various fluid compartments after traumatic brain injury; Temporal considerations and the involvement of the glymphatic system. In Journal of Neurotrauma, 33 (3), p. A22 - A22. 12th Symposium of the International-Neurotrauma-Society, Cape Town, SOUTH AFRICA, February 01, 2016 - February 04, 2016. M.A. Liebert, New York, NY (2016)

D'Souza, R. C. J.; Sharma, K.; Korhonen, A. M. M.; Nagaraj, N.; Choudhary, C.; ten Dijke, P.; Mann, M.: Studying TGF-beta Signaling Using a High Resolution, Quantitative Mass Spectrometric Approach. In EUROPEAN JOURNAL OF CANCER, 48, p. S155 - S155. 22nd Biennial Congress of the European-Association-for-Cancer-Research, Barcelona, SPAIN, July 07, 2012 - July 10, 2012. ELSEVIER SCI LTD, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND (2012)

Nagaraj, N.: Developing mass spectrometry towards applications in clinical proteomics. Dissertation, Ludwig-Maximilians-Universität, München (2010)