Publications of Florian Meier

Strauss, M. T.; Bludau, I.; Zeng, W.-F.; Voytik, E.; Ammar, C.; Schessner, J. P.; Ilango, R.; Gill, M.; Meier, F.; Willems, S. et al.; Mann, M.: AlphaPept: A modern and open framework for MS-based proteomics. Nature Communications 15 (1), 2168 (2024)

Steigerwald, S.; Sinha, A.; Fort, K. L.; Zeng, W.-F.; Niu, L.; Wichmann, C.; Kreutzmann, A.; Mourad, D.; Aizikov, K.; Grinfeld, D. et al.; Makarov, A.; Mann, M.; Meier, F.: Full Mass Range ΦSDM Orbitrap Mass Spectrometry for DIA Proteome Analysis. Molecular & Cellular Proteomics 23 (2), 100713 (2024)

Michaelis, A. C.; Brunner, A.-D.; Zwiebel, M.; Meier, F.; Strauss, M. T.; Bludau, I.; Mann, M.: The social and structural architecture of the yeast protein interactome. Nature 624 (7990), pp. 192 - 200 (2023)

Skowronek, P.; Thielert, M.; Voytik, E.; Tanzer, M. C.; Hansen, F. M.; Willems, S.; Karayel, O.; Brunner, A.-D.; Meier, F.; Mann, M.: Rapid and in-depth coverage of the (phospho-) proteome with deep libraries and optimal window design for dia-PASEF. Molecular & Cellular Proteomics 21 (9), 100279 (2022)

Niu, L.; Thiele, M.; Geyer, P. E.; Rasmussen, D. N.; Webel, H. E.; Santos, A.; Gupta, R.; Meier, F.; Strauss, M. T.; Kjaergaard, M. et al.; Lindvig, K.; Jacobsen, S.; Rasmussen, S.; Hansen, T.; Krag, A.; Mann, M.: Noninvasive proteomic biomarkers for alcohol-related liver disease. Nature Medicine 28 (6), pp. 1277 - 1287 (2022)

Niu, L.; Geyer, P. E.; Gupta, R.; Santos, A.; Meier, F.; Doll, S.; Albrechtsen, N. J. W.; Klein, S.; Ortiz, C.; Uschner, F. E. et al.; Schierwagen, R.; Trebicka, J.; Mann, M.: Dynamic human liver proteome atlas reveals functional insights into disease pathways. Molecular Systems Biology 18 (5), e10947 (2022)

Brunner, A.-D.; Thielert, M.; Vasilopoulou, C.; Ammar, C.; Coscia, F.; Mund, A.; Hoerning, O. B.; Bache, N.; Apalategui, A.; Lubeck, M. et al.; Richter, S.; Fischer, D. S.; Raether, O.; Park, M. A.; Meier, F.; Theis, F. J.; Mann, M.: Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Molecular Systems Biology 18 (3), e10798 (2022)

Meier, F.; Koehler, N. D.; Brunner, A.-D.; Wanka, J.-M. H.; Voytik, E.; Strauss, M. T.; Theis, F. J.; Mann, M.: Deep learning the collisional cross sections of the peptide universe from a million experimental values. Nature Communications 12 (1), 1185 (2021)

Meier, F.; Park, M. A.; Mann, M.: Trapped Ion Mobility Spectrometry and Parallel Accumulation-Serial Fragmentation in Proteomics. Molecular and Cellular Proteomics 20, 100138 (2021)

Niu, L.; Sulek, K.; Vasilopoulou, C. G.; Santos, A.; Wewer Albrechtsen, N. J.; Rasmussen, S.; Meier, F.; Mann, M.: Defining NASH from a Multi-Omics Systems Biology Perspective. Journal of Clinical Medicine 10 (20), 4673 (2021)

Vasilopoulou, C. G.; Sulek, K.; Brunner, A.-D.; Meitei, N. S.; Schweiger-Hufnagel, U.; Meyer, S. W.; Barsch, A.; Mann, M.; Meier, F.: Reply to "Quality control requirements for the correct annotation of lipidomics data". Nature Communications 12 (1), 4772 (2021)

Meier, F.; Brunner, A.-D.; Frank, M.; Ha, A.; Bludau, I.; Voytik, E.; Kaspar-Schoenefeld, S.; Lubeck, M.; Raether, O.; Bache, N. et al.; Aebersold, R.; Collins, B.C.; Röst, H.L.; Mann, M.: diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition. Nature Methods 17 (12), pp. 1229 - 1236 (2020)

Vasilopoulou, C. G.; Sulek, K.; Brunner, A.-D.; Meitei, N. S.; Schweiger-Hufnagel, U.; Meyer, S. W.; Barsch, A.; Mann, M.; Meier, F.: Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts. NATURE COMMUNICATIONS 11 (1), 331 (2020)

Thompson, J. W.; Adams, K. J.; Adamski, J.; Asad, Y.; Borts, D.; Bowden, J. A.; Byram, G.; Dang, V.; Dunn, W. B.; Fernandez, F. et al.; Fiehn, O.; Gaul, D. A.; Huhmer, A. F. R.; Kalli, A.; Koal, T.; Koeniger, S.; Mandal, R.; Meier, F.; Naser, F. J.; O'Neil, D.; Pal, A.; Patti, G. J.; Hai, P.-T.; Prehn, C.; Raynaud, F. I.; Shen, T.; Southam, A. D.; St John-Williams, L.; Sulek, K.; Vasilopoulou, C. G.; Viant, M.; Winder, C. L.; Wishart, D.; Zhang, L.; Zheng, J.; Moseley, M. A.: International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. ANALYTICAL CHEMISTRY 91 (22), pp. 14407 - 14416 (2019)

Wichmann, C.; Meier, F.; Virreira Winter, S.; Brunner, A.-D.; Cox, J.; Mann, M.: MaxQuant. Live Enables Global Targeting of More Than 25,000 Peptides. Molecular and Cellular Proteomics 18 (5), pp. 982 - 994 (2019)

Meier, F.; Brunner, A.-D.; Koch, S.; Koch, H.; Lubeck, M.; Krause, M.; Goedecke, N.; Decker, J.; Kosinski, T.; Park, M. A. et al.; Bache, N.; Hoerning, O.; Cox, J.; Raether, O.; Mann, M.: Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped on mobility mass spectrometer. Molecular and Cellular Proteomics 17 (12), UNSP TIR118.000900, pp. 2533 - 2545 (2018)

Albrechtsen, N. J. W.; Geyer, P. E.; Doll, S.; Treit, P. V.; Bojsen-Moller, K. N.; Martinussen, C.; Jorgensen, N. B.; Torekov, S. S.; Meier, F.; Niu, L. et al.; Santos, A.; Keilhauer, E. C.; Holst, J. J.; Madsbad, S.; Mann, M.: Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery. Cell Systems 7 (6), pp. 601 - 612.e3 (2018)

Bache, N.; Geyer, P. E.; Bekker-Jensen, D. B.; Hoerning, O.; Falkenby, L.; Treit, P. V.; Doll, S.; Paron, I.; Müller, J. B.; Meier, F. et al.; Olsen, J. V.; Vorm, O.; Mann, M.: A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics. Molecular and Cellular Proteomics 17 (11), UNSP TIR118.000853, pp. 2284 - 2296 (2018)

Meier, F.; Geyer, P. E.; Winter, S. V.; Cox, J.; Mann, M.: BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes. Nature methods 15 (6), pp. 440 - 448 (2018)

Virreira Winter, S.; Meier, F.; Wichmann, C.; Cox, J.; Mann, M.; Meissner, F.: EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification. Nature methods 15 (7), pp. 527 - 530 (2018)