Publications of Jose Villaveces

Yim, A.; Koti, P.; Bonnard, A.; Marchiano, F.; Dürrbaum, M.; Garcia-Perez, C.; Villaveces, J.; Gamal, S.; Cardone, G.; Perocchi, F. et al.; Storchova, Z.; Habermann, B. H.: mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. Nucleic Acids Research (London) 48 (2), pp. 605 - 632 (2020)

Ramirez, F.; Bhardwaj, V.; Arrigoni, L.; Lam, K. C.; Gruening, B. A.; Villaveces, J.; Habermann, B.; Akhtar, A.; Manke, T.: High-resolution TADs reveal DNA sequences underlying genome organization in flies. Nature Communications 9, 189 (2018)

Villaveces, J. M.; Koti, P.; Habermann, B. H.: Tools for visualization and analysis of molecular networks, pathways, and -omics data. Advances and applications in bioinformatics and chemistry: AABC 8, pp. 11 - 22 (2015)

Villaveces, J. M.; Jimenez, R. C.; Porras, P.; Del-Toro, N.; Duesbury, M.; Dumousseau, M.; Orchard, S.; Choi, H.; Ping, P.; Zong, N. C. et al.; Askenazi, M.; Habermann, B. H.; Hermjakob, H.: Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. Database: the journal of biological databases and curation 2015, bau 131 (2015)

Yachdav, G.; Goldberg, T.; Wilzbach, S.; Dao, D.; Shih, I.; Choudhary, S.; Crouch, S.; Franz, M.; Garcia, A.; Garcia, L. J. et al.; Grüning, B. A.; Inupakutika, D.; Sillitoe, I.; Thanki, A. S.; Vieira, B.; Villaveces, J. M.; Schneider, M. V.; Lewis, S.; Pettifer, S.; Rost, B.; Corpas, M.: Anatomy of BioJS, an open source community for the life sciences. ELIFE 4, e07009 (2015)

Villaveces, J. M.; Jimenez , R. C.; Habermann, B. H.: PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers. F1000Res 3, f1000research.3-44.v1 (2014)

Villaveces, J. M.; Jimenez, R. C.; Habermann, B. H.: KEGGViewer, a BioJS component to visualize KEGG Pathways. F1000Research 3, f1000research.3-43.v1 (2014)

Wagner, I.; Volkmer, M.; Sharan, M.; Villaveces, J. M.; Oswald, F.; Surendranath, V.; Habermann, B. H.: morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. BMC BIOINFORMATICS 15, 263 (2014)