Publications of Bianca Habermann

Zhang, X.; Avellaneda, J.; Spletter, M. L.; Lemke, S. B.; Mangeol, P.; Habermann, B.; Schnorrer, F.: Mechanoresponsive regulation of myogenesis by the force-sensing transcriptional regulator Tono. Current Biology 34 (18), pp. 4143 - 4159.e6 (2024)

Meiler, A.; Marchiano, F.; Haering, M.; Weitkunat, M.; Schnorrer, F.; Habermann, B. H.: AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators. Scientific Reports 11 (1), 15463 (2021)

Pfeiffer, F.; Losensky, G.; Marchfelder, A.; Habermann, B.; Dyall-Smith, M.: Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T)) and the laboratory strains R1 and NRC-1. MICROBIOLOGYOPEN 9 (2), e974 (2020)

Yim, A.; Koti, P.; Bonnard, A.; Marchiano, F.; Dürrbaum, M.; Garcia-Perez, C.; Villaveces, J.; Gamal, S.; Cardone, G.; Perocchi, F. et al.; Storchova, Z.; Habermann, B. H.: mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. Nucleic Acids Research (London) 48 (2), pp. 605 - 632 (2020)

Hoepfler, M.; Kern, M.; Straub, T.; Prytuliak, R.; Habermann, B. H.; Pfander, B.; Jentsch, S.: Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance. EMBO Journal 38 (11), e100368 (2019)

Pfeiffer, F.; Marchfelder, A.; Habermann, B.; Dyall-Smith, M.: The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1. Microbiology Resource Announcements 8 (28), e00429-19 (2019)

Rolland, S. G.; Schneid, S.; Schwarz, M.; Rackles, E.; Fischer, C.; Haeussler, S.; Regmi, S. G.; Yeroslaviz, A.; Habermann, B.; Mokranjac, D. et al.; Lambie, E.; Conradt, B.: Compromised Mitochondrial Protein Import Acts as a Signal for UPRmt. Cell Reports 28 (7), pp. 1659 - 1669.e5 (2019)

Dürrbaum, M.; Kruse, C.; Nieken, K. J.; Habermann, B.; Storchova, Z.: The deregulated microRNAome contributes to the cellular response to aneuploidy. BMC Genomics 19, 197 (2018)

Prytuliak, R.; Pfeiffer, F.; Habermann, B. H.: SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. BMC Bioinformatics 19, 24 (2018)

Pfeiffer, F.; Zamora-Lagos, M.-A.; Blettinger, M.; Yeroslaviz, A.; Dahl, A.; Gruber, S.; Habermann, B. H.: The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains. BMC Genomics 19, 20 (2018)

Donohoe, C. D.; Csordas, G.; Correia, A.; Jindra, M.; Klein, C.; Habermann, B.; Uhlirova, M.: Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture. PLoS Genetics 14 (3), e1007241 (2018)

Krempel, R.; Kulkarni, P.; Yim, A.; Lang, U.; Habermann, B.; Frommolt, P.: Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB). BMC Bioinformatics 19, 156 (2018)

Ramirez, F.; Bhardwaj, V.; Arrigoni, L.; Lam, K. C.; Gruening, B. A.; Villaveces, J.; Habermann, B.; Akhtar, A.; Manke, T.: High-resolution TADs reveal DNA sequences underlying genome organization in flies. Nature Communications 9, 189 (2018)

Schmähling, S.; Meiler, A.; Lee, Y.; Mohammed, A.; Finkl, K.; Tauscher, K.; Israel, L.; Wirth, M.; Philippou-Massier, J.; Blum, H. et al.; Habermann, B.; Imhof, A.; Song, J.-J.; Müller, J.: Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC. Development 145 (7), UNSP dev163808 (2018)

Spletter, M. L.; Barz, C.; Yeroslaviz, A.; Zhang, X.; Lemke, S. B.; Bonnard, A.; Brunner, E.; Cardone, G.; Basler, K.; Habermann, B. H. et al.; Schnorrer, F.: A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle. eLife 7, e34058 (2018)

Zamora-Lagos, M.-A.; Eckstein, S.; Langer, A.; Gazanis, A.; Pfeiffer, F.; Habermann, B.; Heermann, R.: Phenotypic and genomic comparison of Photorhabdus luminescens subsp laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain. BMC Genomics 19, 854 (2018)

Pfeiffer, F.; Bagyan, I.; Alfaro-Espinoza, G.; Zamora-Lagos, M.-A.; Habermann, B.; Marin-Sanguino, A.; Oesterhelt, D.; Kunte, H. J.: Revision and reannotation of the Halomonas elongata DSM 2581(T) genome. MicrobiologyOpen, e465 (2017)

Papanikos, F.; Daniel, K.; Goercharn-Ramlal, A.; Fei, J.-F.; Kurth, T.; Wojtasz, L.; Dereli, I.; Fu, J.; Penninger, J.; Habermann, B. et al.; Surani, A.; Stewart, A. F.; Toth, A.: The enigmatic meiotic dense body and its newly discovered component, SCML1, are dispensable for fertility and gametogenesis in mice. Chromosoma: Biology of the Nucleus 126 (3), pp. 399 - 415 (2017)

Prytuliak, R.; Volkmer, M.; Meier, M.; Habermann, B. H.: HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons. Nucleic Acids Research (London) 45 (W1), pp. W470 - W477 (2017)

Nakel, K.; Bonneau, F.; Basquin, C.; Habermann, B.; Eckmann, C. R.; Conti, E.: Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity. RNA 22 (8), pp. 1139 - 1145 (2016)