Publications of Jesper V. Olsen

Coordes, B.; Brünger, K. M.; Burger, K.; Soufi, B.; Horenk, J.; Eick, D.; Olsen, J. V.; Strässer, K.: Ctk1 Function Is Necessary for Full Translation Initiation Activity in Saccharomyces cerevisiae. EUKARYOTIC CELL 14 (1), pp. 86 - 95 (2015)

Tinti, M.; Kiemer, L.; Costa, S.; Miller, M. L.; Sacco, F.; Olsen, J. V.; Carducci, M.; Paoluzi, S.; Langone, F.; Workman, C. T. et al.; Blom, N.; Machida, K.; Thompson, C. M.; Schutkowski, M.; Brunak, S.; Mann, M.; Mayer, B. J.; Castagnoli, L.; Cesareni, G.: The SH2 Domain Interaction Landscape. CELL REPORTS 3 (4), pp. 1293 - 1305 (2013)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation (vol 9, pg 6786, 2010). JOURNAL OF PROTEOME RESEARCH 11 (6), pp. 3506 - 3508 (2012)

Beli, P.; Lukashchuk, N.; Wagner, S. A.; Weinert, B. T.; Olsen, J. V.; Baskcomb, L.; Mann, M.; Jackson, S. P.; Choudhary, C.: Proteomic Investigations Reveal a Role for RNA Processing Factor THRAP3 in the DNA Damage Response. Molecular Cell 46 (2), pp. 212 - 225 (2012)

Lin, T. C.; Gombos, L.; Neuner, A.; Sebastian, D.; Olsen, J. V.; Hrle, A.; Benda, C.; Schiebel, E.: Phosphorylation of the Yeast gamma-Tubulin Tub4 Regulates Microtubule Function. PLoS ONE 6 (5), e19700, pp. [1] - [17] (2011)

Cox, J.; Neuhauser, N.; Michalski, A.; Scheltema, R. A.; Olsen, J. V.; Mann, M.: Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 10 (4), pp. 1794 - 1805 (2011)

Rigbolt, K. T. G.; Prokhorova, T. A.; Akimov, V.; Henningsen, J.; Johansen, P. T.; Kratchmarova, I.; Kassem, M.; Mann, M.; Olsen, J. V.; Blagoev, B.: System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation. Science Signaling 4 (164), rs3, pp. [1] - [17] (2011)

Olsen, J. V.; Mann, M.: Effective Representation and Storage of Mass Spectrometry-Based Proteomic Data Sets for the Scientific Community. Science Signaling 4 (160), pe7, pp. [1] - [4] (2011)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation. Journal of Proteome Research 9 (12), pp. 6786 - 6794 (2010)

Vermeulen, M.; Eberl, H. C.; Matarese, F.; Marks, H.; Denissov, S.; Butter, F.; Lee, K. K.; Olsen, J. V.; Hyman, A. A.; Stunnenberg, H. G. et al.; Mann, M.: Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers. Cell 142 (6), pp. 967 - 980 (2010)

Christensen, G. L.; Kelstrup, C. D.; Lyngso, C.; Sarwar, U.; Bogebo, R.; Sheikh, S. P.; Gammeltoft, S.; Olsen, J. V.; Hansen, J. L.: Quantitative Phosphoproteomics Dissection of Seven-transmembrane Receptor Signaling Using Full and Biased Agonists. Molecular & Cellular Proteomics 9 (7), pp. 1540 - 1553 (2010)

Weintz, G.; Olsen, J. V.; Frühauf, K.; Niedzielska, M.; Amit, I.; Jantsch, J.; Mages, J.; Frech, C.; Dölken, L.; Mann, M. et al.; Lang, R.: The phosphoproteome of toll-like receptor-activated macrophages. Molecular Systems Biology 6, 371, pp. [1] - [16] (2010)

Olsen, J. V.; Vermeulen, M.; Santamaria, A.; Kumar, C.; Miller, M. L.; Jensen, L. J.; Gnad, F.; Cox, J.; Jensen, T. S.; Nigg, E. A. et al.; Brunak, S.; Mann, M.: Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis. Science Signaling 3 (104), ra3, pp. [1] - [15] (2010)

Mortensen, P.; Gouw, J. W.; Olsen, J. V.; Ong, S. E.; Rigbolt, K. T. G.; Bunkenborg, J.; Cox, J.; Foster, L. J.; Heck, A. J. R.; Blagoev, B. et al.; Andersen, J. S.; Mann, M.: MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics. Journal of Proteome Research 9 (1), pp. 393 - 403 (2010)

Olsen, J. V.; Schwartz, J. C.; Griep-Raming, J.; Nielsen, M. L.; Damoc, E.; Denisov, E.; Lange, O.; Remes, P.; Taylor, D.; Splendore, M. et al.; Wouters, E. R.; Senko, M.; Makarov, A.; Mann, M.; Horning, S.: A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed. Molecular & Cellular Proteomics 8 (12), pp. 2759 - 2769 (2009)

Pan, C. P.; Olsen, J. V.; Daub, H.; Mann, M.: Global Effects of Kinase Inhibitors on Signaling Networks Revealed by Quantitative Phosphoproteomics. Molecular & Cellular Proteomics 8 (12), pp. 2796 - 2808 (2009)

Choudhary, C.; Olsen, J. V.; Brandts, C.; Cox, J.; Reddy, P. N. G.; Boehmer, F. D.; Gerke, V.; Schmidt-Arras, D. E.; Berdel, W. E.; Mueller-Tidow, C. et al.; Mann, M.; Serve, H.: Mislocalized Activation of Oncogenic RTKs Switches Downstream Signaling Outcomes. Molecular Cell 36 (2), pp. 326 - 339 (2009)

Gnad, F.; de Godoy, L. M. F.; Cox, J.; Neuhauser, N.; Ren, S.; Olsen, J. V.; Mann, M.: High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast. Proteomics 9 (20), pp. 4642 - 4652 (2009)

Sharma, K.; Weber, C.; Bairlein, M.; Greff, Z.; Keri, G.; Cox, J.; Olsen, J. V.; Daub, H.: Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nature Methods 6 (10), pp. 741 - 744 (2009)

Soufi, B.; Olsen, J. V.; Gnad, F.; Kumar, C.; Mann, M.; Mijakovic, I.; Macek, B.: Organization and dynamics of the bacterial Ser/Thr/Tyr phosphoproteome. Amino Acids 37 (4), p. 763 - 763 (2009)