Publications

Publications

Journal Publications (*: Co-first, °: Co-corresponding)

 

2024
 

  • P.R. Steen, E.M. Unterauer, L.A. Masullo, J. Kwon, A. Perovic, K. Jevdokimenko, F. Opazo, E.F. Fornasiero, and R. Jungmann
    The DNA-PAINT palette: A comprehensive performance analysis of fluorescent dyes
    Nature Methods (2024). 21: 1755–1762
     
  • R. van den Eynde, F. Hertel, S. Abakumov, B. Krajnik, S. Hugelier, A. Auer, J. Hellmeier, T. Schlichtharle, R.M. Grattan, D.S. Lidke, R. Jungmann, M. Leutenegger, W. Vandenberg°, and P. Dedecker°
    Simultaneous multicolor fluorescence imaging using PSF splitting
    Nature Methods (2024). 21: 1801–1805
     
  • N. Soxpollard, S. Strauss, R. Jungmann, and I.S. MacPherson
    Selection of antibody-binding covalent aptamers
    Communications Chemistry (2024). 7: 174
     
  • Z. Yu, A.V. Baptist, S.C.M. Reinhardt, E. Bertosin, C. Dekker, R. Jungmann, A. Heuer-Jungemann°, S. Caneva°
    Compliant DNA Origami Nanoactuators as Size-Selective Nanopores
    Advanced Materials (2024). 36: 2405104
     
  • W. Van Der Byl, S. Nüssing, T.J. Peters, A. Ahn, H. Li, G. Ledergor, E. David, A.S. Koh, M.V. Wagle, C.D.T. Deguit, M.N. de Menezes, A. Travers, S. Sampurno, K.M. Ramsbottom, R. Li, A. Kallies, P.A. Beavis, R. Jungmann, M.M.C. Bastings, G.T. Belz, S. Goel, J.A. Trapani, G.R. Crabtree, H.Y. Chang, I. Amit, C.C. Goodnow, F. Luciani,* and I.A. Parish*
    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
    Immunity (2024). 57(6): 1324–1344
     
  • J. Hellmeier*, S. Strauss*, S. Xu, L.A. Masullo, E.M. Unterauer, R. Kowalewski, R. Jungmann
    Quantification of absolute labeling efficiency at the single-protein level
    Nature Methods (2024). 21: 1702–1707
     
  • E.M. Unterauer*, S.S. Boushehri*, K. Jevdokimenko*, L.A. Masullo, M. Ganji, S. Sograte-Idrissi, R. Kowalewski, S. Strauss, S.C.M. Reinhardt, A. Perovic, C. Marr, F. Opazo, E.F. Fornasiero°, R. Jungmann°
    Spatial proteomics in neurons at single-protein resolution
    Cell (2024). 187: 1785–1800
     
  • K. Cramer, S.C.M. Reinhardt, A. Auer,  J.Y. Shin°, R. Jungmann°
    Comparing divisome organization between vegetative and sporulating Bacillus subtilis at the nanoscale using  DNA- PAINT
    Science Advances (2024). 10: eadk5847
     
  • K. Paloja, J. Weiden, J. Hellmeier, A.S. Eklund, S.C.M. Reinhardt, I.A. Parish, R. Jungmann, M.M.C. Bastings
    Balancing the Nanoscale Organization in Multivalent Materials for Functional Inhibition of the Programmed Death-1 Immune Checkpoint
    ACS Nano (2024). 18: 1381–1395

 

2023

  • I.M. Glueck, G.P. Mathias, S. Strauss, V. Rat, I. Gialdini, T.S. Ebert, C. Stafford, G. Agam, S. Manley, V. Hornung, R. Jungmann, C. Sieben°, D.C. Lamb°
    Nanoscale organization of the endogenous ASC speck
    iScience (2023). 26, 108382
     
  • C. Niederauer, C. Nguyen, M. Wang-Henderson, J. Stein, S. Strauss, A. Cumberworth, F. Stehr, R. Jungmann, P. Schwille, K.A. Ganzinger
    Dual-color DNA-PAINT single-particle tracking enables extended studies of membrane protein interactions
    Nature Communications (2023). 14:4345
     
  • S.C.M. Reinhardt*, L.A. Masullo*, I. Baudrexel*, P.R. Steen*, R. Kowalewski, A.S. Eklund, S. Strauss, E.M. Unterauer, T. Schlichthaerle, M.T. Strauss, C. Klein, R. Jungmann
    Ångström-resolution fluorescence microscopy
    Nature (2023). 617: 711–716
     
  • A. Ferapontov, M. Omer, I. Baudrexel, J.S. Nielsen, D.M. Dupont, K. Juul-Madsen, P. Steen, A.S. Eklund, S. Thiel, T. Vorup-Jensen, R. Jungmann, J. Kjems, and S.E. Degn
    Antigen footprint governs activation of the B cell receptor
    Nature Communications (2023). 14: 976
     
  • S. Strauss, J. Acker, G. Papa, D. Desiro, F. Schueder, A. Borodavka°, R. Jungmann°
    Principles of RNA recruitment to viral ribonucleoprotein condensates in a segmented dsRNA virus
    elife (2023). 12: e68670
     
  • F. Schueder, P. Mangeol, E.H. Chan, R. Rees, J. Schünemann, R. Jungmann°, D. Görlich°, F. Schnorrer°
    Nanobodies combined with DNA-PAINT super-resolution reveal a staggered titin nano-architecture in flight muscles
    eLife (2023). 12: e79344
     
  • A.S. Eklund, R. Jungmann
    Optimized coiled-coil interactions for multiplexed Peptide-PAINT
    Small (2023), 19, 2206347
     
  • S. Strauss, R. Jungmann
    Slow-Off-Rate-Modified Aptamer Labeling for Fluorescence Microscopy and DNA-PAINT
    In: Mayer, G., Menger, M.M. (eds) Nucleic Acid Aptamers.
    Methods in Molecular Biology (2023)

 

2022

  • M. Fazel, M.J. Wester, D.J. Schodt, S. Restrepo Cruz, S. Strauss, F. Schueder, T. Schlichthaerle, J.M. Gillette, D.S. Lidke, B. Rieger, R. Jungmann, K.A. Lidke
    High-precision estimation of emitter positions using Bayesian grouping of localizations
    Nature Communications (2022). 13: 7152 
     
  • H. Khateb, R.S. Sørensen, K. Cramer, A.S. Eklund, J. Kjems, R.L. Meyer, R. Jungmann, and D.S. Sutherland
    The Role of Nanoscale Distribution of Fibronectin in the Adhesion of Staphylococcus aureus Studied by Protein Patterning and DNA-PAINT
    ACS Nano (2022). 16(7): 10392-10403
     
  • A.C. O’Neill*, F. Uzbas*, G. Antognolli*, F. Merino*, K. Draganova, A. Jäck, S. Zhang, G. Pedini, J.P. Schessner, K. Cramer, A. Schepers, F. Metzger, M. Esgleas, P. Smialowski, R. Guerrini, S. Falk, R. Feederle, S. Freytag, Z. Wang, M. Bahlo, R. Jungmann, C. Bagni, G.H.H. Borner, S.P. Robertson, S.M. Hauck and M. Götz 
    Spatial centrosome proteome of human neural cells uncovers disease-relevant heterogeneity
    Science (2022). 376 
     
  • N. Gimber°, S. Strauss, R. Jungmann, J. Schmoranzer°
    Simultaneous multicolor DNA-PAINT without sequential fluid exchange using spectral demixing
    Nano Letters (2022). 22(7): 2682-2690
     
  • E.M. Unterauer and R. Jungmann
    Quantitative Imaging with DNA-PAINT for Applications in Neuroscience
    Frontiers in Synaptic Neuroscience (2022). 13: 798267

 

2021

  • J. Stein*, F. Stehr*, R. Jungmann, P. Schwille
    Calibration-free counting of low molecular copy numbers in single DNA-PAINT localization clusters
    Biophysical Reports (2021). 1: 100032
     
  • A.S. Eklund*, A. Comberlato*, I.A. Parish, R. Jungmann°, M.M.C. Bastings°
    Quantification of Strand Accessibility in Biostable DNA Origami with Single-Staple Resolution
    ACS Nano (2021). 15(11): 17668-17677
     
  • F. Geiger, J. Acker, G. Papa, X. Wang, W.E. Arter, K.L. Saar, N.A. Erkamp, R. Qi, J.P.K. Bravo, S. Strauss, G. Krainer, O.R. Burrone, R. Jungmann, T.P.J. Knowles, H. Engelke, A. Borodavka
    Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses
    EMBO Journal (2021). e107711
     
  • F.N. Gür, S. Kempter, F. Schueder, C. Sikeler, M.J. Urban, R. Jungmann, P.C. Nickels, T. Liedl
    Double- to single-strand transition induces forces and motion in DNA origami structures
    Advanced Materials (2021). 33: 202101986 
     
  • F. Stehr*, J. Stein*, J. Bauer, C. Niederauer, R. Jungmann, K. Ganzinger°, P. Schwille°
    Tracking single particle for hours via continuous DNA-mediated fluorophore exchange
    Nature Communications (2021). 12: 4432
     
  • S.M. Früh, U. Matti, P.R. Spycher, M. Rubini, S. Lickert, T. Schlichthaerle, R. Jungmann, V. Vogel, J. Ries, I. Schoen
    Site-Specifically-Labeled Antibodies for Super-Resolution Microscopy Reveal In Situ Linkage Errors
    ACS Nano (2021). 15(7): 12161-12170 
     
  • T.A.P.M. Huijben, H. Heydarian, A. Auer, F. Schueder, R. Jungmann, S. Stallinga, B. Rieger 
    Detecting structural heterogeneity in single-molecule localization microscopy data
    Nature Communications (2021). 12: 3791
     
  • M. Lelek, M.T. Gyparaki, G. Beliu, F. Schueder, J. Griffié, S. Manley°, R. Jungmann°, M. Sauer°, M. Lakadamyali°, C. Zimmer°
    Single-molecule localization microscopy
    Nature Reviews Methods Primers (2021). 1: 39
     
  • H. Heydarian, M. Joosten, A. Przybylski, F. Schueder, R. Jungmann, B. van Werkhoven, J. Keller-Findeisen, J. Ries, S. Stallinga, M. Bates, B. Rieger
    3D particle averaging and detection of macromolecular symmetry in localization microscopy
    Nature Communications (2021). 12: 2847
     
  • T. Schlichthaerle*, C. Lindner*, R. Jungmann
    Super-resolved visualization of single DNA-based tension sensors in cell adhesion
    Nature Communications (2021). 12: 2510
     
  • M. Ganji*, T. Schlichthaerle*, A.S. Eklund, S. Strauss, R. Jungmann
    Quantitative assessment of labeling probes for super-resolution microscopy using designer DNA nanostructures
    ChemPhysChem (2021). 22(10): 911–914 
     
  • A. Dasgupta, J. Deschamps, U. Matti, U. Hübner, J. Becker, S. Strauss, R. Jungmann, R. Heintzmann, J. Ries 
    Direct supercritical angle localization microscopy for nanometer 3D superresolution
    Nature Communications (2021). 12: 1180
     
  • L.S. Fischer*, C. Klingner*, T. Schlichthaerle*, M.T. Strauss, R. Böttcher, R. Fässler°, R. Jungmann°, C. Grashoff°
    Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion
    Nature Communications (2021). 12: 919
     
  • J. Hellmeier, R. Platzer, A.S. Eklund, T. Schlichthaerle, A. Karner, V. Motsch, M.C. Schneider, E. Kurz, V. Bamieh, M. Brameshuber, J. Preiner, R. Jungmann, H. Stockinger, G.J. Schütz, J.B. Huppa, E. Sevcsik
    DNA origami demonstrate the unique stimulatory power of single pMHCs as T cell antigens
    PNAS (2021). 118(4): e2016857118
     
  • F. Schueder*, J. Lara-Gutiérrez*, D. Haas, K.S. Beckwith, P. Yin, J. Ellenberg, R. Jungmann 
    Super-resolution spatial proximity detection with proximity-PAINT
    Angewandte Chemie Int. Ed. (2021). 60: 716–720

 

2020

  • S.F.J. Wickham, A. Auer, J. Min, N. Ponnuswamy, J.B. Woehrstein, F. Schueder, M.T. Strauss, J. Schnitzbauer, B. Nathwani, Z. Zhao, S.D. Perrault, J. Hahn, S. Lee, M.M. Bastings, S.W. Helmig, A.L Kodal, P. Yin, R. Jungmann°, W.M. Shih°
    Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
    Nature Communications (2020). 11: 5768
     
  • A.P. Curd, J. Leng, R.E. Hughes, A.J. Cleasby, B. Rogers, C.H. Trinh, M.A. Baird, Y. Takagi, C. Tiede, C. Sieben, S. Manley, T. Schlichthaerle, R. Jungmann, J. Ries, H. Shroff, M. Peckham
    Nanoscale pattern extraction from relative positions of sparse 3D localizations
    Nano Letters (2020). 21(3): 1213-1220
     
  • F. Schueder, E.M. Unterauer, M. Ganji, R. Jungmann
    DNA-barcoded fluorescence microscopy for spatial omics
    Proteomics (2020). 20(23): 1900368
     
  • J.M. Brockman, H. Su, A.T. Blanchard, Y. Duan, T. Meyer, M.E. Quach, R. Glazier, A. Bazrafshan, R.L. Bender, A.V. Kellner, H. Ogasawara, R. Ma, F. Schueder, B.G. Petrich, R. Jungmann, R. Li, A.L. Mattheyses, Y. Ke, K. Salaita 
    Live-cell super-resolved PAINT imaging of piconewton cellular traction forces
    Nature Methods (2020). 17: 1018-1024 
     
  • A.S. Eklund*, M. Ganji*, G. Gavins, O. Seitz, R. Jungmann
    Peptide-PAINT super-resolution imaging using transient coiled coil interactions
    Nano Letters (2020). 20(09): 6732-6737
     
  • S. Strauss, R. Jungmann
    Up to 100-fold speed-up and multiplexing in optimized DNA-PAINT
    Nature Methods (2020). 17: 78-791 
     
  • A. Auer, M.T. Strauss, S. Strauss, R. Jungmann
    nanoTRON: a Picasso module for MLP-based classification of super-resolution data
    Bioinformatics (2020). 36(11): 3620-3622
     
  • S. Sograte-Idrissi, T. Schlichthaerle, C.J. Duque-Afonso, M. Alevra, S. Strauss, T. Moser, R. Jungmann, S.O. Rizzoli, F. Opazo
    Circumvention of common labelling artefacts using secondary nanobodies
    Nanoscale (2020). 12: 10226-10239
     
  • M.I.E. Harwardt, M.S. Schröder, Y. Li, S. Malkusch, P. Freund, S. Gupta, N. Janjic, S. Strauss, R. Jungmann, M.S. Dietz°, M. Heilemann° 
    Single-Molecule Super-Resolution Microscopy Reveals Heteromeric Complexes of MET and EGFR upon Ligand Activation
    International Journal of Molecular Sciences (2020). 21(8): 2803 
     
  • J. Cnossen*, T. Hinsdale*, R. Thorsen, F. Schueder, R. Jungmann, C.S. Smith°, B. Rieger°, S. Stallinga°
    Localization microscopy at doubled precision with patterned illumination
    Nature Methods (2020). 17: 59-63

 

2019

  • F. Schueder, J. Stein, F. Stehr, A. Auer, B. Sperl, M.T. Strauss, P. Schwille, R. Jungmann
    An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions
    Nature Methods (2019). 16: 1101-1104 
     
  • R. Sasmala, N. Das Sahaa, F. Schueder, D. Joshie, S. Vasuf, R. Jungmann, S.S. Agasti
    Dynamic Host-Guest Interaction Enables Autonomous Single Molecule Blinking and Super-Resolution Imaging
    Chemical Communications (2019). 55: 14430-14433
     
  • J. Stein*, F. Stehr*, P. Schueler, P. Blumhardt, F. Schueder, J. Mücksch, R. Jungmann, P. Schwille
    Towards absolute molecular numbers in DNA-PAINT
    Nano Letters (2019). 19(11): 8182-8190
     
  • H. Goetzke, M. Kilisch, M. Martínez-Carranza, S. Sograte-Idrissi, A. Rajavel, T. Schlichthaerle, N. Engels, R. Jungmann, P. Stenmark, F. Opazo, S. Frey
    The ALFA-tag is a highly versatile tool for nanobody-based bioscience applications
    Nature Communications (2019). 10: 4403
     
  • M. Fazel, M.J. Wester, H. Mazloom-Farsibaf, M.B.M. Meddens, A.S. Eklund, T. Schlichthaerle, F. Schueder, R. Jungmann, K.A. Lidke 
    Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo
    Scientific Reports (2019). 9: 13791
     
  • C. Böger, A. Hafner, T. Schlichthaerle, M.T. Strauss, S. Malkusch, U. Endesfelder, R. Jungmann, E.M. Schuman°, M. Heilemann°
    Super-resolution imaging and estimation of protein copy numbers at single synapses with DNA-point accumulation for imaging in nanoscale topography
    Neurophotonics (2019). 6(3): 035008
     
  • F. Frottin, F. Schueder, S. Tiwary, R. Gupta, R. Koerner, T. Schlichthaerle, J. Cox, R. Jungmann°, F.U. Hartl°, M.S. Hipp°
    The nucleolus functions as a phase-separated protein quality compartment
    Science (2019). 365: 342-347
     
  • T. Schlichthaerle*, M.T. Strauss*, F. Schueder*, A. Auer, B. Nijmeijer, M. Kueblbeck, V.J. Sabinina, J.V. Thevathasan, J. Ries, J. Ellenberg, R. Jungmann
    Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT
    Angewandte Chemie Int. Ed. (2019). 58: 13004-13008
     
  • K. Cramer, A. Bolender, I. Stockmar, R. Jungmann, R. Kasper°, J.Y. Shin°
    Visualization of bacterial protein complexes labeled with fluorescent proteins and nanobody binders for STED microscopy
    International Journal of Molecular Sciences (2019). 20(14): 3376 
     
  • F. Stehr*, J. Stein*, F. Schueder, P. Schwille°, R. Jungmann°
    Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification
    Nature Communications (2019). 10: 1268
     
  • O.K. Wade*, J.B. Woehrstein*, P.C. Nickels*, S. Strauss*, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann
    124-color super-resolution imaging by engineering DNA-PAINT blinking kinetics
    Nano Letters (2019). 19(4): 2641-2646
     
  • T. Schlichthaerle*, M. Ganji*, A. Auer, O.K. Wade, R. Jungmann
    Bacterial‐derived antibody binders as small adapters for DNA‐PAINT  microscopy
    ChemBioChem (2019). 20(8): 1032-1038.
    See also: ChemBioTalents
     
  • G.C. Ortega*, S. Falk*, P.A. Johansson*, E. Peyre, L. Broic, S.K. Sahu, W. Hirst, T. Schlichthaerle, C. Romero, K. Draganova, S. Vinopal, K. Chinnappa, A. Gavranovic, T. Karakaya, T. Steininger, J. Merl-Pham, R. Feederle, W. Shao, S. Shi, S.M. Hauck, R. Jungmann, F. Bradke, V. Borrell, A. Geerlof, S. Reber, V.K. Tiwari, W.B. Huttner, M. Wilsch-Bräuninger, L. Nguyen, M. Götz
    The centrosome protein Akna regulates neurogenesis via microtubule  organization
    Nature (2019). 567: 113-117
     
  • S. Kempter, A. Khmelinskaia, M.T. Strauss, P. Schwille, R. Jungmann, T. Liedl, W. Bae
    Single Particle Tracking and Super-Resolution Imaging of Membrane-Assisted Stop-and-Go Diffusion and Lattice Assembly of DNA Origami
    ACS Nano (2019). 13(2): 996-1002

 

2018

  • P. Blumhardt, J. Stein, J. Mücksch, F. Stehr, J. Bauer, R. Jungmann, P. Schwille 
    Photo-Induced Depletion of Binding Sites in DNA-PAINT Microscopy 
    Molecules (2018). 23(12): 3165 
     
  • N. Krahmer, B. Nafaji, F. Schueder, F. Quagliarini, M. Steger, S. Seitz, R. Kasper, F. Salinas, J. Cox, N.H. Uhlenhaut, T.C. Walther, R. Jungmann, A. Zeigerer, G.H.H. Borner, M. Mann 
    Organellar proteomics and phospho-proteomics reveal subcellular reorganization in diet-induced hepatic steatosis 
    Developmental Cell (2018). 47(2): 205-221 
     
  • N. Basnet, H. Nedozralova, A.H. Crevenna, S. Bodakuntla, T. Schlichthaerle, M. Taschner, G. Cardone, C. Janke, R. Jungmann, M.M. Magiera, C. Biertümpfel, N. Mizuno 
    Direct induction of microtubule branching by microtubule nucleation factor SSNA1 
    Nature Cell Biology (2018). 20: 1172-1180 
     
  • H. Heydarian, F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, B. Rieger 
    Template-free 2D particle fusion in localization microscopy 
    Nature Methods (2018). 15: 781–784 
    See also News & Views by Mark Bates  Nature Methods  (2018). 15: 771-772. 
     
  • A. Auer, T. Schlichthaerle, J.B. Woehrstein, F. Schueder, M.T. Strauss, H. Grabmayr, R. Jungmann 
    Nanometer-scale multiplexed super-resolution imaging with an economic 3D-DNA-PAINT microscope 
    ChemPhysChem (2018). 19(22): 3024-3034 
    See also litetirf.jungmannlab.org 
     
  • S. Strauss, P.C. Nickels, M.T. Strauss, V.J. Sabinina, J. Ellenberg, J.D. Carter, S. Gupta, N. Janjic, R. Jungmann 
    Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging 
    Nature Methods (2018). 15: 685–688 
    See also News & Views by Regan P. Moore and Wesley R. Legant  Nature Methods  (2018). 15: 659-660. 
     
  • T. Schlichthaerle, A.S. Eklund, F. Schueder, M.T. Strauss, C. Tiede, A. Curd, J. Ries, M. Peckham, D.C. Tomlinson, R. Jungmann 
    Site-specific labeling of Affimers for DNA-PAINT microscopy 
    Angewandte Chemie Int. Ed. (2018). 57: 11060-11063  
     
  • N.S. Deußner-Helfmann, A. Auer, M.T. Strauss, S. Malkusch, M.S. Dietz, H. Barth, R. Jungmann°, M. Heilemann° 
    Correlative Single-Molecule FRET and DNA-PAINT Imaging 
    Nano Letters (2018). 18(7): 4626-4630  
     
  • M.T. Strauss*, F. Schueder*, D. Haas*, P.C. Nickels, R. Jungmann 
    Quantifying absolute addressability in DNA origami with molecular resolution 
    Nature Communications (2018). 9: 1600 
     
  • J. Mücksch*, P. Blumhardt*, M.T. Strauss, E.P. Petrov, R. Jungmann, P. Schwille 
    Quantifying reversible surface binding via surface-integrated FCS 
    Nano Letters (2018). 18(5): 3185-3192 
     
  • S. Baenfer, D. Schneider, J. Dewes, M.T. Strauss, S. Freibert, T. Heimerl, U.G. Maier, H. Elsaesser, R. Jungmann, R. Jacob 
    A molecular mechanism to recruit galectin-3 into multivesicular bodies for polarized exosomal secretion  
    PNAS (2018). 115(19): E4396-E4405 
     
  • A. Kuzyk°, R. Jungmann°, G.P. Acuna°, N. Liu° 
    DNA origami route for nanophotonics 
    ACS Photonics (2018). 5: 1151-1163 

 

2017 

  • F. Schueder, J. Lara-Guitérrez, B.J. Beliveau, S.K. Saka, H.M. Sasaki, J.B. Woehrstein, M.T. Strauss, H. Grabmayr, P. Yin°, R. Jungmann° 
    Multiplexed 3D super-resolution imaging of whole cells using Spinning Disk Confocal Microscopy and DNA-PAINT 
    Nature Communications (2017). 8: 2090 
    Featured as Research Highlight in Nature Methods (2018). 15: 96-97. 
     
  • E. Graugnard, W.L. Hughes, R. Jungmann, M.A. Kostiainen, V. Linko 
    Nanometrology and super-resolution imaging with DNA 
    MRS Bulletin (2017). 42(12): 951-959 
     
  • A. Auer, M.T. Strauss, T. Schlichthaerle, R. Jungmann 
    Fast, background-free DNA-PAINT imaging using FRET-based probes 
    Nano Letters (2017). 17(10): 6428-6434 
     
  • L.L. Ong, N. Hanikel, O.K. Yaghi, C. Grun, M.T. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J.Y. Kishi, C.A. Myhrvold, A. Zhu, R. Jungmann, G. Bellot°, Y. Ke°, P. Yin°  
    Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components 
    Nature (2017). 552: 72-77 
     
  • J.L. Werbin, M.S. Avendano, V. Becker, R. Jungmann, P. Yin°, G. Danuser°, P. K. Sorger° 
    Multiplexed Exchange-PAINT imaging reveals ligand-dependent EGFR and Met interactions in the plasma membrane 
    Scientific Reports (2017). 7: 12150 
     
  • Y. Wang, J.B. Woehrstein, N. Donoghue, M. Dai, M.S. Avendano, R.C.J. Schackmann, J. Zoeller, S.S.H. Wang, P.W. Tillberg, D. Park, S.W. Lapan, E.S. Boyden, J.S. Brugge, P.S. Kaeser, G.M. Church, S.S. Agasti°, R. Jungmann°, P. Yin° 
    Rapid sequential in situ multiplexing with DNA-Exchange-Imaging in Neuronal Cells and Tissues 
    Nano Letters (2017). 17(10): 6131-6139 
     
  • J.B. Woehrstein*, M.T. Strauss*, L.L. Ong, B. Wei, D.Y. Zhang, R. Jungmann°, P. Yin° 
    Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA 
    Science Advances (2017). 3: e1602128 
     
  • J. Schnitzbauer*, M.T. Strauss*, T. Schlichthaerle, F. Schueder, R. Jungmann 
    Super-Resolution Microscopy with DNA-PAINT 
    Nature Protocols (2017). 12: 1198-1228 
     
  • F. Schueder, M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann 
    Universal Super-Resolution Multiplexing by DNA Exchange 
    Angewandte Chemie Int. Ed. (2017). 56: 4052-4055 
     
  • S. S. Agasti*, Y. Wang*, F. Schueder, A. Sukumar, R. Jungmann°, P. Yin° 
    DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging 
    Chemical Science (2017). 8: 3080-3091

 

2016 

  • M. Dai, R. Jungmann, P. Yin 
    Optical imaging of individual biomolecules in densely packed clusters 
    Nature Nanotechnology (2016). 11(9): 798-807 
     
  • R. Jungmann 
    Overcoming obstacles in localization microscopy 
    Nature Methods (2016). 13: 301-302 
     
  • R. Jungmann*, M.S. Avendaño*, M. Dai, J.B. Woehrstein, S. S. Agasti, Z. Feiger, A. Rodal, P. Yin 
    Quantitative Super-Resolution Imaging with qPAINT 
    Nature Methods (2016). 13: 439-442 
     
  • T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, R. Jungmann 
    DNA nanotechnology and fluorescence applications 
    Current Opinion in Biotechnology (2016). 39: 41-47

 

2015 

  • T. Raschle, C. Lin, R. Jungmann, W.M. Shih, G. Wagner 
    Controlled co-reconstitution of multiple membrane proteins in lipid bilayer nanodiscs using DNA as a scaffold 
    ACS Chemical Biology (2015). 10(11): 2448-54 
     
  • J.B. Knudsen. L. Liu, A.L.B. Kodal, M. Madsen, Q. Li, J. Song, J.B. Woehrstein, S.F.J. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W.M. Shih. R. Jungmann, M. Dong°, K.V. Gothelf° 
    Routing of individual polymers in designed patterns 
    Nature Nanotechnology (2015). 11: 892-898 
     
  • M.B. Scheible, L.L. Ong, J.B. Woehstein, R. Jungmann, P. Yin, and F.C. Simmel 
    A compact DNA cube with side length 10 nm 
    Small (2015). 11(39): 5200-5 
     
  • B. Beliveau, A. Boettiger, M. Avendaño, R. Jungmann, R. McCole, E. Joyce, C. Kim-Kiselak, F. Bantignies, C. Fonseka, J. Erceg, M. Hannan, H. Hoang, D. Colognori, J. Lee, W. Shih, P. Yin, X. Zhuang, and C. Wu 
    Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes 
    Nature Communications (2015). 6: 1-13

 

2014 

 

2013 

 

2012 

 

2011 

  • E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, and F. C. Simmel 
    
Timing molecular motion and production with a synthetic transcriptional clock
 
    PNAS (2011). 108: E784-E793 
     
  • R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, and F. C. Simmel
 
    DNA origami-based nanoribbons: assembly, length distribution, and twist 
    Nanotechnology (2011). 22: 275301 
     
  • R. Jungmann, M. E. Szabo, G. Schitter, R. Tang, D. Vashishth, P. K. Hansma, and P. J. Thurner
 
    Local Strain and Damage Mapping in Single Trabeculae during Three-Point Bending Tests
 
    Journal of the Mechanical Behavior of Biomedical Materials (2011). 4(4): 523-534

 

2010 

  • R. Jungmann*, C. Steinhauer*, M. Scheible, A. Kuzyk, P. Tinnefeld°, and F. C. Simmel° 
    
Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami
 
    Nano Letters (2010). 10(11): 4756-4761
 
     
  • D. Hönig, J. DeRouchey, R. Jungmann, C. Koch, C. Plank, and J. O. Rädler
 
    Biophysical Characterization of Copolymer-Protected Gene Vectors
 
    Biomacromolecules (2010). 11(7): 1802-1809 
     
  • V. Tejedor, O. Bénichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber-Unkel, L.B. Oddershede, and R. Metzler
 
    Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method
 
    Biophysical Journal (2010). 98(7): 1364-1372

 

2009 

  • C. Steinhauer*, R. Jungmann*, T. Sobey, F. C. Simmel°, and P. Tinnefeld°
 
    DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy
 
    Angewandte Chemie Int. Ed. (2009). 48(47): 8870-8873
 
     
  • P. J. Thurner, B. Erickson, P. Turner, R. Jungmann, J. Lelujian, A. Proctor, J. C. Weaver, G. Schitter, D. E. Morse, and P. K. Hansma 
    
The effect of NaF in vitro on the mechanical and material properties of trabecular and cortical bone
 
    Advanced Materials (2009). 21(4): 451-457

 

2008 

  • R. Jungmann, T. Liedl, T. L. Sobey, W. Shih, and F. C. Simmel 
    
Isothermal assembly of DNA origami structures using denaturing agents 
    Journal of the American Chemical Society (2008). 130: 10062-10063 
     
  • R. Jungmann, S. Renner, and F. C. Simmel 
    
From DNA nanotechnology to synthetic biology 
    HFSP Journal (2008). 2: 99-109 
     
  • P. K. Hansma, P. Turner, B. Drake, E. Yurtsev, A. Proctor, P. Mathews, J. Lelujian, C. Randall, J. Adams, R. Jungmann, F. Garza-de-Leon, G. Fantner, H. Mkrtchyan, M. Pontin, A. Weaver, M. B. Brown, N. Sahar, R. Rossello, and D. Kohn
 
    The bone diagnostic instrument II: Indentation distance increase 
    Review of Scientific Instruments (2008). 79(6): 064303-8

 

2007 

  • M. E. Lauer, R. Jungmann, J. H. Kindt, S. Magonov, J. H. Fuhrhop, E. Oroudjev, and H. G. Hansma
 
    Formation and Healing of Micrometer-Sized Channel Networks on Highly Mobile Au(111) Surfaces 
    Langmuir (2007). 23(10): 5459-5465 
     
  • P. J. Thurner, B. Erickson, R. Jungmann, Z. Schriock, J. C. Weaver, G. E. Fantner, G. Schitter, D. E. Morse, and P. K. Hansma 
    
High-speed photography of compressed human trabecular bone correlates whitening to microscopic damage
 
    Engineering Fracture Mechanics (2007). 74(12): 1928-1941

 

Book Chapters

  • M. Scheible, R. Jungmann, and F. C. Simmel 
    
Assembly and microscopic characterization of DNA origami structures 
    
Advances in Experimental Medicine and Biology (2012). 733: 87–96 
     
  • C. Steinhauer, C. Forthmann, R. Jungmann, J. Vogelsang, F. C. Simmel, and P. Tinnefeld
 
    Nanoscopy using localization and temporal separation of fluorescence from single molecules
 
    NATO Science for Peace and Security Series B: Physics and Biophysics (2011). Part 1, 87-106 
     
  • P. J. Thurner, E. Oroudjev, R. Jungmann, C. Kreutz, J. H. Kindt, G. Schitter, T. O. Okouneva, M. E. Lauer, G. E. Fantner, H. G. Hansma, and P. K. Hansma
 
    Imaging of Bone Ultrastructure using Atomic Force Microscopy 
    Modern Research and Educational Topics in Microscopy 3rd Edition (2007). Vol. 1, 37-48 
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